If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ), 'gf_id' => 'HOM05D000750', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000750' ), 'data_identifier' => 'HOM05D000750', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000750', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '779', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39910' => 'bna', 'A01p41260' => 'bna', 'A02p04780' => 'bna', 'A03p08710' => 'bna', 'A03p38340' => 'bna', 'A05p35730' => 'bna', 'A05p43420' => 'bna', 'A09p55460' => 'bna', 'A10p21330' => 'bna', 'Aa31LG11G11420' => 'aar', 'Aa31LG1G15660' => 'aar', 'Aa31LG1G18460' => 'aar', 'Aa31LG1G18470' => 'aar', 'Aa31LG1G880' => 'aar', 'Aa31LG5G14530' => 'aar', 'Aa31LG5G9830' => 'aar', 'Aa31LG8G830' => 'aar', 'Aa31sc2107G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2452' => 'aag', 'Actinidia01183' => 'ach', 'Actinidia06297' => 'ach', 'Actinidia06858' => 'ach', 'Actinidia09004' => 'ach', 'Actinidia16269' => 'ach', 'Actinidia16272' => 'ach', 'Actinidia21706' => 'ach', 'Actinidia22084' => 'ach', 'Actinidia26070' => 'ach', 'Actinidia32699' => 'ach', 'Actinidia32700' => 'ach', 'Actinidia39138' => 'ach', 'Actinidia39364' => 'ach', 'Ah.01g021990' => 'amhyb', 'Ah.04g153200' => 'amhyb', 'Ah.04g156480' => 'amhyb', 'Ah.04g161600' => 'amhyb', 'Ah.06g193100' => 'amhyb', 'AL3G13010' => 'aly', 'AL3G13820' => 'aly', 'AL3G13850' => 'aly', 'AL3G25630' => 'aly', 'AL4G17430' => 'aly', 'AL6G29390' => 'aly', 'Aqoxy1G00150' => 'aox', 'Aqoxy2G00093' => 'aox', 'Aqoxy2G00556' => 'aox', 'Aqoxy7G01450' => 'aox', 'Aqoxy7G03784' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8Z2YQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9A92AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HLH7R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT5RSP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JWM5KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7XQWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH2AV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8R372' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V1GPC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V428UN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8XPG3' => 'arhy', 'AT2G25760' => 'ath', 'AT3G03930' => 'ath', 'AT3G03940' => 'ath', 'AT3G13670' => 'ath', 'AT5G18190' => 'ath', 'ATR0598G161' => 'atr', 'ATR0705G035' => 'atr', 'ATR1120G165' => 'atr', 'Atru.chr1.3515' => 'acertr', 'Atru.chr2.1378' => 'acertr', 'Atru.chr3.2222' => 'acertr', 'Atru.chr3.2223' => 'acertr', 'Atru.chr7.1334' => 'acertr', 'Atru.chr7.2062' => 'acertr', 'AUR62000036' => 'cqu', 'AUR62009239' => 'cqu', 'AUR62019206' => 'cqu', 'AUR62022196' => 'cqu', 'AUR62031901' => 'cqu', 'AUR62032056' => 'cqu', 'AUR62032689' => 'cqu', 'AUR62041966' => 'cqu', 'AUR62043669' => 'cqu', 'AUR62043803' => 'cqu', 'AUR62043804' => 'cqu', 'AUR62044103' => 'cqu', 'AUR62044329' => 'cqu', 'AUR62044330' => 'cqu', 'BcaB01g05181' => 'bca', 'BcaB04g18786' => 'bca', 'BcaB04g18792' => 'bca', 'BcaB04g20999' => 'bca', 'BcaB05g23298' => 'bca', 'BcaB06g25447' => 'bca', 'BcaB08g35217' => 'bca', 'BcaB08g36697' => 'bca', 'BcaC01g03981' => 'bca', 'BcaC01g04903' => 'bca', 'BcaC03g13583' => 'bca', 'BcaC04g18718' => 'bca', 'BcaC04g18721' => 'bca', 'BcaC05g29160' => 'bca', 'BcaC05g29162' => 'bca', 'BcaC05g29890' => 'bca', 'BcaC05g30240' => 'bca', 'BcaC05g30295' => 'bca', 'BcaC07g40847' => 'bca', 'BcaC09g47766' => 'bca', 'BcaC09g48360' => 'bca', 'BcaNung04526' => 'bca', 'BcaNung04947' => 'bca', 'BcaNung05020' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00450' => 'bna', 'BolC1t05042H' => 'bol', 'BolC1t05797H' => 'bol', 'BolC2t06883H' => 'bol', 'BolC3t13501H' => 'bol', 'BolC3t15589H' => 'bol', 'BolC3t16918H' => 'bol', 'BolC5t34083H' => 'bol', 'BolC5t34964H' => 'bol', 'BolC8t51417H' => 'bol', 'BolC9t58721H' => 'bol', 'BraA01t04032Z' => 'bra', 'BraA01t04549Z' => 'bra', 'BraA02t05437Z' => 'bra', 'BraA03t10194Z' => 'bra', 'BraA03t12986Z' => 'bra', 'BraA05t22380Z' => 'bra', 'BraA05t23082Z' => 'bra', 'BraA09t40948Z' => 'bra', 'BraA10t44196Z' => 'bra', 'C01p50930' => 'bna', 'C02p09740' => 'bna', 'C03p10160' => 'bna', 'C03p32480' => 'bna', 'C03p46540' => 'bna', 'C05p54180' => 'bna', 'C05p63120' => 'bna', 'C08p38450' => 'bna', 'C09p58790' => 'bna', 'CAN.G128.64' => 'can', 'CAN.G140.23' => 'can', 'CAN.G20.20' => 'can', 'CAN.G20.21' => 'can', 'CAN.G208.64' => 'can', 'CAN.G309.66' => 'can', 'CAN.G350.17' => 'can', 'CAN.G575.14' => 'can', 'CANSAT11G0672' => 'cansat', 'CANSAT25G1118' => 'cansat', 'CANSAT25G2605' => 'cansat', 'CANSAT56G2077' => 'cansat', 'CANSAT56G3501' => 'cansat', 'CANSAT78G0041' => 'cansat', 'CARHR078060' => 'chi', 'CARHR078070' => 'chi', 'CARHR088370' => 'chi', 'CARHR115480' => 'chi', 'CARHR194870' => 'chi', 'Carub.0003s0317' => 'cru', 'Carub.0003s0319' => 'cru', 'Carub.0003s1316' => 'cru', 'Carub.0004s0554' => 'cru', 'Carub.0006s1647' => 'cru', 'Ca_03363_v3' => 'car', 'Ca_06531_v3' => 'car', 'Ca_07067_v3' => 'car', 'Ca_08262_v3' => 'car', 'Ca_11378_v3' => 'car', 'Ca_15579_v3' => 'car', 'Ca_23252_v3' => 'car', 'CBR_g46901' => 'cbr', 'CBR_g68412' => 'cbr', 'Cc00_g06740' => 'ccan', 'Cc01_g01010' => 'ccan', 'Cc04_g02650' => 'ccan', 'Cc06_g22930' => 'ccan', 'Cc07_g20380' => 'ccan', 'Cc07_g20390' => 'ccan', 'Cc07_g20400' => 'ccan', 'Cc08_g09840' => 'ccan', 'CDE02G1381' => 'cde', 'CDE02G4374' => 'cde', 'CDE04G2463' => 'cde', 'CDE05G0274' => 'cde', 'CDE05G0924' => 'cde', 'CDE05G1899' => 'cde', 'CDE08G1130' => 'cde', 'CDE10G0934' => 'cde', 'CDE10G1012' => 'cde', 'Cfa003657' => 'cfa', 'Cfa009625' => 'cfa', 'Cfa013382' => 'cfa', 'Cfa016440' => 'cfa', 'Cfa021542' => 'cfa', 'Cfa021549' => 'cfa', 'Ciclev10007635m.g' => 'ccl', 'Ciclev10007666m.g' => 'ccl', 'Ciclev10014444m.g' => 'ccl', 'Ciclev10019090m.g' => 'ccl', 'Ciclev10025028m.g' => 'ccl', 'CiPaw.01G232300' => 'cil', 'CiPaw.02G146300' => 'cil', 'CiPaw.03G233100' => 'cil', 'CiPaw.07G202500' => 'cil', 'CiPaw.08G026700' => 'cil', 'CiPaw.09G001800' => 'cil', 'CiPaw.13G171500' => 'cil', 'CiPaw.14G014000' => 'cil', 'CiPaw.14G130200' => 'cil', 'CiPaw.14G131300' => 'cil', 'ClCG02G023830' => 'cla', 'ClCG04G005300' => 'cla', 'ClCG09G000130' => 'cla', 'COL.COLO4_09927' => 'col', 'COL.COLO4_10448' => 'col', 'COL.COLO4_11570' => 'col', 'COL.COLO4_13601' => 'col', 'COL.COLO4_20992' => 'col', 'COL.COLO4_25617' => 'col', 'COL.COLO4_30495' => 'col', 'COL.COLO4_30496' => 'col', 'COL.COLO4_34906' => 'col', 'Cpa.g.sc109.9' => 'cpa', 'Cpa.g.sc119.90' => 'cpa', 'Cpa.g.sc51.113' => 'cpa', 'Cpa.g.sc7.204' => 'cpa', 'Cre06.g281100' => 'cre', 'Cre16.g666200' => 'cre', 'CsaV3_2G030810' => 'csa', 'CsaV3_4G013290' => 'csa', 'CsaV3_4G023540' => 'csa', 'CsaV3_7G035330' => 'csa', 'CSS0001389' => 'camsi', 'CSS0003165' => 'camsi', 'CSS0006537' => 'camsi', 'CSS0007328' => 'camsi', 'CSS0011600' => 'camsi', 'CSS0015701' => 'camsi', 'CSS0027331' => 'camsi', 'CSS0038305' => 'camsi', 'CSS0043262' => 'camsi', 'CSS0043858' => 'camsi', 'DCAR_000759' => 'dca', 'DCAR_004463' => 'dca', 'DCAR_013688' => 'dca', 'DCAR_016192' => 'dca', 'DCAR_023077' => 'dca', 'DCAR_024345' => 'dca', 'DCAR_028720' => 'dca', 'Dinv09748' => 'din', 'Dinv13420' => 'din', 'Dinv13421' => 'din', 'Dinv23383' => 'din', 'Dinv23384' => 'din', 'Dinv27917' => 'din', 'Dinv30444' => 'din', 'Dinv36619' => 'din', 'Dinv37013' => 'din', 'Dinv37984' => 'din', 'Dinv41593' => 'din', 'Duzib106G1106' => 'dzi', 'Duzib128G0477' => 'dzi', 'Duzib150G0761' => 'dzi', 'Duzib168G0641' => 'dzi', 'Duzib168G0967' => 'dzi', 'Duzib170G0443' => 'dzi', 'Duzib187G1236' => 'dzi', 'Duzib192G0419' => 'dzi', 'Duzib235G1206' => 'dzi', 'ECA233G3629' => 'eca', 'ECA238G0034' => 'eca', 'ECA240G0306' => 'eca', 'ECA246G1571' => 'eca', 'ECA248G0049' => 'eca', 'ECA285G0001' => 'eca', 'EL10Ac2g03989' => 'bvu', 'EL10Ac3g06818' => 'bvu', 'EL10Ac4g10340' => 'bvu', 'EL10Ac9g21217' => 'bvu', 'Eucgr.B03631' => 'egr', 'Eucgr.C00608' => 'egr', 'Eucgr.C02319' => 'egr', 'Eucgr.C02958' => 'egr', 'Eucgr.C02959' => 'egr', 'Eucgr.C02960' => 'egr', 'Eucgr.C02977' => 'egr', 'Eucgr.C02978' => 'egr', 'Eucgr.C02979' => 'egr', 'Eucgr.F03069' => 'egr', 'Eucgr.J02945' => 'egr', 'Eucgr.K01498' => 'egr', 'FAN02G0615' => 'fan', 'FAN05G1081' => 'fan', 'FAN08G1278' => 'fan', 'FAN09G0170' => 'fan', 'FAN11G2269' => 'fan', 'FAN13G1919' => 'fan', 'FAN14G5388' => 'fan', 'FAN15G2884' => 'fan', 'FAN16G1668' => 'fan', 'FAN18G2246' => 'fan', 'FAN19G2424' => 'fan', 'FAN19G2535' => 'fan', 'FAN20G1729' => 'fan', 'FAN21G3045' => 'fan', 'FAN23G0772' => 'fan', 'FAN23G2081' => 'fan', 'FAN25G3451' => 'fan', 'FAN26G0296' => 'fan', 'FAN26G1890' => 'fan', 'FAN27G3167' => 'fan', 'FAN28G0377' => 'fan', 'FAN28G1731' => 'fan', 'FAN28G1865' => 'fan', 'FvH4_1g05050' => 'fve', 'FvH4_1g28110' => 'fve', 'FvH4_2g35440' => 'fve', 'FvH4_3g44690' => 'fve', 'FvH4_5g10720' => 'fve', 'FvH4_6g32280' => 'fve', 'Glyma.04G085900' => 'gma', 'Glyma.04G086000' => 'gma', 'Glyma.06G087500' => 'gma', 'Glyma.07G016100' => 'gma', 'Glyma.08G201600' => 'gma', 'Glyma.08G361700' => 'gma', 'Glyma.10G294200' => 'gma', 'Glyma.16G041500' => 'gma', 'Glyma.18G300100' => 'gma', 'Glyma.20G244000' => 'gma', 'Gohir.A05G022500' => 'ghi', 'Gohir.A05G045800' => 'ghi', 'Gohir.A05G128900' => 'ghi', 'Gohir.A07G022249' => 'ghi', 'Gohir.A08G012200' => 'ghi', 'Gohir.A08G012300' => 'ghi', 'Gohir.A08G020016' => 'ghi', 'Gohir.A08G240800' => 'ghi', 'Gohir.A10G066300' => 'ghi', 'Gohir.A11G259400' => 'ghi', 'Gohir.A11G296600' => 'ghi', 'Gohir.A11G302766' => 'ghi', 'Gohir.A13G106600' => 'ghi', 'Gohir.A13G171900' => 'ghi', 'Gohir.A13G186700' => 'ghi', 'Gohir.D05G024000' => 'ghi', 'Gohir.D05G047500' => 'ghi', 'Gohir.D05G133400' => 'ghi', 'Gohir.D05G201233' => 'ghi', 'Gohir.D07G025200' => 'ghi', 'Gohir.D08G022800' => 'ghi', 'Gohir.D08G022900' => 'ghi', 'Gohir.D08G261500' => 'ghi', 'Gohir.D10G059100' => 'ghi', 'Gohir.D10G067600' => 'ghi', 'Gohir.D11G269600' => 'ghi', 'Gohir.D11G310300' => 'ghi', 'Gohir.D13G109900' => 'ghi', 'Gohir.D13G177700' => 'ghi', 'Gohir.D13G193500' => 'ghi', 'Gorai.001G026300' => 'gra', 'Gorai.004G018000' => 'gra', 'Gorai.004G018100' => 'gra', 'Gorai.004G279600' => 'gra', 'Gorai.006G042700' => 'gra', 'Gorai.007G289500' => 'gra', 'Gorai.007G343500' => 'gra', 'Gorai.009G024100' => 'gra', 'Gorai.009G048800' => 'gra', 'Gorai.009G137100' => 'gra', 'Gorai.009G206800' => 'gra', 'Gorai.011G072100' => 'gra', 'Gorai.013G123300' => 'gra', 'Gorai.013G175600' => 'gra', 'Gorai.013G203000' => 'gra', 'Gorai.013G219500' => 'gra', 'GSVIVG01015403001' => 'vvi', 'GSVIVG01017003001' => 'vvi', 'GSVIVG01025385001' => 'vvi', 'GSVIVG01033400001' => 'vvi', 'GSVIVG01035288001' => 'vvi', 'HanXRQChr01g0021161' => 'han', 'HanXRQChr01g0024161' => 'han', 'HanXRQChr01g0024731' => 'han', 'HanXRQChr02g0051951' => 'han', 'HanXRQChr02g0054181' => 'han', 'HanXRQChr02g0057911' => 'han', 'HanXRQChr03g0061901' => 'han', 'HanXRQChr04g0101041' => 'han', 'HanXRQChr06g0180031' => 'han', 'HanXRQChr07g0196771' => 'han', 'HanXRQChr08g0224931' => 'han', 'HanXRQChr08g0234431' => 'han', 'HanXRQChr09g0239561' => 'han', 'HanXRQChr09g0253331' => 'han', 'HanXRQChr09g0267311' => 'han', 'HanXRQChr10g0286271' => 'han', 'HanXRQChr11g0344921' => 'han', 'HanXRQChr13g0398021' => 'han', 'HanXRQChr14g0437571' => 'han', 'HanXRQChr15g0465241' => 'han', 'HanXRQChr17g0560881' => 'han', 'HanXRQChr17g0567791' => 'han', 'Haze_15837' => 'cav', 'Haze_19417' => 'cav', 'Haze_19446' => 'cav', 'Haze_21906' => 'cav', 'Haze_22994' => 'cav', 'Haze_25704' => 'cav', 'Hma1.2p1_0018F.1_g013440' => 'hma', 'Hma1.2p1_0049F.1_g028380' => 'hma', 'Hma1.2p1_0154F.1_g068110' => 'hma', 'Hma1.2p1_0430F.1_g151470' => 'hma', 'Hma1.2p1_0518F.1_g171240' => 'hma', 'Hma1.2p1_0972F.1_g242870' => 'hma', 'Hma1.2p1_1056F.1_g252640' => 'hma', 'HPP92_013958' => 'vpl', 'HPP92_021780' => 'vpl', 'HPP92_024786' => 'vpl', 'HPP92_024787' => 'vpl', 'Hund00685' => 'sun', 'Hund03386' => 'sun', 'Hund19237' => 'sun', 'Hund19497' => 'sun', 'Hund21649' => 'sun', 'Lalb_Chr01g0013151' => 'lal', 'Lalb_Chr02g0144161' => 'lal', 'Lalb_Chr14g0362521' => 'lal', 'Lalb_Chr14g0364471' => 'lal', 'Lalb_Chr21g0307481' => 'lal', 'Lalb_Chr22g0359201' => 'lal', 'Lalb_Chr22g0359211' => 'lal', 'Lalb_Chr23g0269681' => 'lal', 'Lalb_Chr25g0280131' => 'lal', 'Lj1A1136T63' => 'lonja', 'Lj1g0010812' => 'lja', 'Lj1g0017424' => 'lja', 'Lj1g0027863' => 'lja', 'Lj2A358T44' => 'lonja', 'Lj2A705G48' => 'lonja', 'Lj2C706T8' => 'lonja', 'Lj3g0020234' => 'lja', 'Lj5C54T16' => 'lonja', 'Lj5g0012422' => 'lja', 'Lj7A699T53' => 'lonja', 'Lj7C648T14' => 'lonja', 'Lj8A570T25' => 'lonja', 'Lju361C14T4' => 'lonja', 'Lju857A12T54' => 'lonja', 'Lsat_1_v5_gn_1_37500' => 'lsa', 'Lsat_1_v5_gn_1_40161' => 'lsa', 'Lsat_1_v5_gn_1_59680' => 'lsa', 'Lsat_1_v5_gn_1_68240' => 'lsa', 'Lsat_1_v5_gn_2_101461' => 'lsa', 'Lsat_1_v5_gn_5_122840' => 'lsa', 'Lsat_1_v5_gn_5_32541' => 'lsa', 'Lsat_1_v5_gn_6_36980' => 'lsa', 'Lsat_1_v5_gn_7_40621' => 'lsa', 'Lsat_1_v5_gn_7_42540' => 'lsa', 'Lsat_1_v5_gn_8_93781' => 'lsa', 'Lsat_1_v5_gn_9_47881' => 'lsa', 'Manes.03G060000' => 'mes', 'Manes.04G133400' => 'mes', 'Manes.08G143900' => 'mes', 'Manes.11G034400' => 'mes', 'Manes.15G104900' => 'mes', 'Manes.16G074100' => 'mes', 'Manes.16G117000' => 'mes', 'Mapoly0030s0052' => 'mpo', 'MBI04_g06591_MAGBIO' => 'mbi', 'MBI04_g08937_MAGBIO' => 'mbi', 'MBI08_g19820_MAGBIO' => 'mbi', 'MCO05G323' => 'mco', 'MD02G1048800' => 'mdo', 'MD03G1011500' => 'mdo', 'MD08G1111700' => 'mdo', 'MD09G1204700' => 'mdo', 'MD11G1014200' => 'mdo', 'MD12G1003400' => 'mdo', 'MD15G1091200' => 'mdo', 'MD15G1187100' => 'mdo', 'MD17G1184900' => 'mdo', 'Medtr1g007150' => 'mtr', 'Medtr1g116205' => 'mtr', 'Medtr1g116210' => 'mtr', 'Medtr3g110240' => 'mtr', 'Medtr7g006030' => 'mtr', 'Medtr7g085540' => 'mtr', 'Medtr8g014050' => 'mtr', 'MELO3C008800.2' => 'cme', 'MELO3C011136.2' => 'cme', 'MELO3C014662.2' => 'cme', 'MELO3C024443.2' => 'cme', 'MELO3C025530.2' => 'cme', 'MELO3C027630.2' => 'cme', 'MELO3C028699.2' => 'cme', 'MELO3C032553.2' => 'cme', 'MELO3C034145.2' => 'cme', 'Migut.E01533' => 'egut', 'Migut.I00903' => 'egut', 'Migut.J01890' => 'egut', 'Migut.K00005' => 'egut', 'Migut.M00633' => 'egut', 'MSTRG.11031' => 'ama', 'MSTRG.11690' => 'ama', 'MSTRG.19936' => 'ama', 'Nitab4.5_0000001g0110' => 'nta', 'Nitab4.5_0000239g0030' => 'nta', 'Nitab4.5_0000664g0170' => 'nta', 'Nitab4.5_0001309g0080' => 'nta', 'Nitab4.5_0001567g0180' => 'nta', 'Nitab4.5_0001620g0050' => 'nta', 'Nitab4.5_0001737g0080' => 'nta', 'Nitab4.5_0002445g0020' => 'nta', 'Nitab4.5_0003555g0090' => 'nta', 'Nitab4.5_0005477g0090' => 'nta', 'Nitab4.5_0006446g0040' => 'nta', 'Nitab4.5_0007481g0010' => 'nta', 'Nitab4.5_0013024g0020' => 'nta', 'Nn1g08513' => 'nnu', 'Nn2g15734' => 'nnu', 'Nn2g15871' => 'nnu', 'Nn6g35308' => 'nnu', 'Nn7g35845' => 'nnu', 'Nn7g35966' => 'nnu', 'Nn8g39095' => 'nnu', 'Nn8g39212' => 'nnu', 'Oeu003215.1' => 'oeu', 'Oeu012403.3' => 'oeu', 'Oeu024505.1' => 'oeu', 'Oeu026794.1' => 'oeu', 'Oeu026795.1' => 'oeu', 'Oeu038812.2' => 'oeu', 'Oeu050601.1' => 'oeu', 'Os01g0198200' => 'osa', 'Os01g0744300' => 'osa', 'Os01g0772600' => 'osa', 'Os03g0793500' => 'osa', 'Os05g0200500' => 'osa', 'Os07g0171300' => 'osa', 'Peaxi162Scf00062g01924' => 'pax', 'Peaxi162Scf00064g01532' => 'pax', 'Peaxi162Scf00076g01047' => 'pax', 'Peaxi162Scf00211g00312' => 'pax', 'Peaxi162Scf00247g00314' => 'pax', 'Peaxi162Scf00249g00622' => 'pax', 'Peaxi162Scf00441g00216' => 'pax', 'Peaxi162Scf00699g00015' => 'pax', 'PGR102G0712' => 'pgr', 'PGR102G1196' => 'pgr', 'PGR102G1866' => 'pgr', 'PGR142G1969' => 'pgr', 'PGSC0003DMG400004279' => 'stu', 'PGSC0003DMG400018580' => 'stu', 'PGSC0003DMG400023662' => 'stu', 'PGSC0003DMG400029394' => 'stu', 'PGSC0003DMG400032142' => 'stu', 'Phvul.001G076900' => 'pvu', 'Phvul.001G110300' => 'pvu', 'Phvul.008G002500' => 'pvu', 'Phvul.009G111300' => 'pvu', 'Phvul.010G145900' => 'pvu', 'Potri.001G009700' => 'ptr', 'Potri.001G189100' => 'ptr', 'Potri.003G049700' => 'ptr', 'Potri.003G215700' => 'ptr', 'Potri.006G236600' => 'ptr', 'Potri.018G046400' => 'ptr', 'Potri.019G034500' => 'ptr', 'Pp3c11_250' => 'ppa', 'Pp3c11_260' => 'ppa', 'Pp3c11_26900' => 'ppa', 'Pp3c11_310' => 'ppa', 'Pp3c11_430' => 'ppa', 'Pp3c14_20' => 'ppa', 'Pp3c15_10' => 'ppa', 'Pp3c15_23910' => 'ppa', 'Pp3c19_10' => 'ppa', 'Pp3c19_1270' => 'ppa', 'Pp3c19_23110' => 'ppa', 'Pp3c19_23120' => 'ppa', 'Pp3c19_300' => 'ppa', 'Pp3c19_620' => 'ppa', 'Pp3c21_14160' => 'ppa', 'Pp3c23_130' => 'ppa', 'Pp3c23_350' => 'ppa', 'Pp3c25_15510' => 'ppa', 'Pp3c26_15730' => 'ppa', 'Pp3c2_38400' => 'ppa', 'Pp3c3_30' => 'ppa', 'Pp3c3_33348' => 'ppa', 'Pp3c3_38200' => 'ppa', 'Pp3c3_38350' => 'ppa', 'Pp3c4_32410' => 'ppa', 'Pp3c5_29050' => 'ppa', 'Pp3c5_29200' => 'ppa', 'Pp3c6_29890' => 'ppa', 'Pp3c6_30070' => 'ppa', 'Pp3c9_24370' => 'ppa', 'Pp3s421_40' => 'ppa', 'Pp3s76_42' => 'ppa', 'PRCOL_00005530' => 'pco', 'Prupe.1G445600' => 'ppe', 'Prupe.3G060400' => 'ppe', 'Prupe.6G011900' => 'ppe', 'Prupe.7G003800' => 'ppe', 'Prupe.7G229400' => 'ppe', 'Psat3g088920' => 'psa', 'Psat4g221160' => 'psa', 'Psat5g020360' => 'psa', 'Psat5g296280' => 'psa', 'Psat6g035320' => 'psa', 'Psat6g239760' => 'psa', 'Psat6g239920' => 'psa', 'PSO173G0128' => 'pso', 'PSO339G2498' => 'pso', 'PSO339G6170' => 'pso', 'PSO384G2672' => 'pso', 'PSO384G2715' => 'pso', 'PSO384G3030' => 'pso', 'PSO541G2687' => 'pso', 'PSO675G7092' => 'pso', 'QL01p010281' => 'qlo', 'QL02p085560' => 'qlo', 'QL05p020433' => 'qlo', 'QL07p019542' => 'qlo', 'QL12p041088' => 'qlo', 'RcHm_v2.0_Chr1g0322201' => 'rch', 'RcHm_v2.0_Chr1g0331421' => 'rch', 'RcHm_v2.0_Chr2g0090661' => 'rch', 'RcHm_v2.0_Chr2g0140231' => 'rch', 'RcHm_v2.0_Chr2g0164291' => 'rch', 'RcHm_v2.0_Chr3g0497131' => 'rch', 'RcHm_v2.0_Chr5g0081361' => 'rch', 'RcHm_v2.0_Chr6g0306451' => 'rch', 'RcHm_v2.0_Chr7g0187401' => 'rch', 'Rhsim01G0127400' => 'rsi', 'Rhsim01G0186100' => 'rsi', 'Rhsim03G0243800' => 'rsi', 'Rhsim04G0087400' => 'rsi', 'Rhsim12G0202700' => 'rsi', 'Rhsim13G0228400' => 'rsi', 'RhsimUnG0159000' => 'rsi', 'Sabra01G0007700' => 'sbr', 'Sabra01G0152000' => 'sbr', 'Sabra03G0028700' => 'sbr', 'Sabra03G0028800' => 'sbr', 'Sabra03G0160900' => 'sbr', 'Sabra18G0045100' => 'sbr', 'Sabra19G0042400' => 'sbr', 'Sabra19G0044600' => 'sbr', 'SalBow1G3873' => 'sbo', 'SalBow1G5696' => 'sbo', 'SalBow2G1843' => 'sbo', 'SalBow6G3137' => 'sbo', 'Sc06g0000840' => 'sci', 'Sc06g0004350' => 'sci', 'Sc13g0002670' => 'sci', 'Sc19g0006460' => 'sci', 'Sc23g0005410' => 'sci', 'Sed0002826' => 'sed', 'Sed0007763' => 'sed', 'Sed0008335' => 'sed', 'Sed0013678' => 'sed', 'Sed0014913' => 'sed', 'Sed0028176' => 'sed', 'SEGI_00257' => 'sgi', 'SEGI_01722' => 'sgi', 'SEGI_10291' => 'sgi', 'SGA_v2.0_scaffold103G30027' => 'sas', 'SGA_v2.0_scaffold110G31322' => 'sas', 'SGA_v2.0_scaffold169G38657' => 'sas', 'SGA_v2.0_scaffold274G46515' => 'sas', 'SGA_v2.0_scaffold332G48952' => 'sas', 'SGA_v2.0_scaffold66G22538' => 'sas', 'SGA_v2.0_scaffold69G23018' => 'sas', 'SGA_v2.0_scaffold69G23321' => 'sas', 'SGA_v2.0_scaffold94G28400' => 'sas', 'SGA_v2.0_scaffold9G04809' => 'sas', 'SHI11075' => 'shi', 'SMO201G0131' => 'smo', 'SMO367G0324' => 'smo', 'Solyc01g006120.4' => 'sly', 'Solyc01g014350.1' => 'sly', 'Solyc08g066400.3' => 'sly', 'Solyc10g080700.2' => 'sly', 'Solyc11g070170.2' => 'sly', 'Solyc12g095830.3' => 'sly', 'Solyc12g100310.2' => 'sly', 'Sopen01g002120' => 'spe', 'Sopen08g020220' => 'spe', 'Sopen10g031240' => 'spe', 'Sopen11g028840' => 'spe', 'Sopen12g031730' => 'spe', 'Sopen12g034940' => 'spe', 'Sp3g02910' => 'spa', 'Sp3g11870' => 'spa', 'Sp4g05430' => 'spa', 'Sp6g26130' => 'spa', 'TAR623G0617' => 'tar', 'TAR623G1275' => 'tar', 'TAR624G1225' => 'tar', 'TAR624G1310' => 'tar', 'TAR633G2823' => 'tar', 'TAR636G0136' => 'tar', 'TAR636G1616' => 'tar', 'TAR636G2419' => 'tar', 'THA.LOC104803748' => 'tha', 'THA.LOC104810349' => 'tha', 'THA.LOC104815654' => 'tha', 'THA.LOC104822628' => 'tha', 'THA.LOC104827271' => 'tha', 'Thecc.05G294300' => 'tca', 'Thecc.06G098500' => 'tca', 'Thecc.09G047200' => 'tca', 'Thecc.09G112000' => 'tca', 'Thecc.09G215100' => 'tca', 'Thhalv10001925m.g' => 'esa', 'Thhalv10012841m.g' => 'esa', 'Thhalv10020172m.g' => 'esa', 'Thhalv10020173m.g' => 'esa', 'TPR.G10374' => 'tpr', 'TPR.G10422' => 'tpr', 'TPR.G10798' => 'tpr', 'TPR.G14112' => 'tpr', 'TPR.G15092' => 'tpr', 'TPR.G24503' => 'tpr', 'TPR.G27351' => 'tpr', 'TPR.G32249' => 'tpr', 'TPR.G40518' => 'tpr', 'TPR.G5906' => 'tpr', 'TWI18G0858' => 'twi', 'TWI32G0980' => 'twi', 'TWI34G0358' => 'twi', 'TWI34G1182' => 'twi', 'TWI60G1466' => 'twi', 'TWI60G1485' => 'twi', 'TWI63G0859' => 'twi', 'TWI75G0309' => 'twi', 'unitig_0.g2571' => 'ugi', 'unitig_37.g12717' => 'ugi', 'unitig_46.g18452' => 'ugi', 'unitig_88.g27688' => 'ugi', 'vmacro04238' => 'vma', 'vmacro04239' => 'vma', 'vmacro04247' => 'vma', 'vmacro04248' => 'vma', 'vmacro06208' => 'vma', 'vmacro09142' => 'vma', 'vmacro09143' => 'vma', 'vmacro11052' => 'vma', 'vmacro12567' => 'vma', 'vmacro16986' => 'vma', 'vmacro17017' => 'vma', 'vmacro17019' => 'vma', 'vmacro22719' => 'vma', 'VMungo0331G0038' => 'vmu', 'VMungo0647G1921' => 'vmu', 'VMungo1309G0391' => 'vmu', 'VMungo1383G2264' => 'vmu', 'VMungo1383G2937' => 'vmu', 'Zm00001eb009420' => 'zma', 'Zm00001eb068790' => 'zma', 'Zm00001eb092140' => 'zma', 'Zm00001eb117070' => 'zma', 'Zm00001eb120390' => 'zma', 'Zm00001eb128650' => 'zma', 'Zm00001eb133900' => 'zma', 'Zm00001eb146020' => 'zma', 'Zm00001eb284080' => 'zma', 'Zm00001eb301020' => 'zma', 'Zm00001eb323010' => 'zma', 'Zm00001eb323020' => 'zma', 'Zm00001eb337930' => 'zma', 'Zm00001eb370090' => 'zma', 'Zm00001eb371100' => 'zma', 'Zm00001eb383140' => 'zma', 'Zm00001eb389340' => 'zma' ) $gf_id = 'HOM05D000750' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000750' ) $data_identifier = 'HOM05D000750' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 14, 'bca' => (int) 24, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 30, 'gra' => (int) 16, 'vvi' => (int) 5, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 10, 'lja' => (int) 5, 'lsa' => (int) 12, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 32, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 10, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 5, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1